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Maître de conférence (UEVE - chaire CNRS)
tel : +33 1 64 85 35 35
fax :
Laboratoire Statistique et Génome
UMR CNRS 8071, USC INRA
23 boulevard de France
91037 Évry, France
 Version française
Click here to acces to the full publication list
List of publications ordered by year
to appear
Journal article
- More Power via Graph-Structured Tests for Differential Expression of Gene Networks
Jacob, L. and Neuvial, P. and Dudoit, S.
Annals of Applied Statistics
http://www.e-publications.org/ims/submission/index.php/AOAS/user/submissionFile/8652?confirm=b67b9b50
- Single Nucleotide Polymorphism-defined Class-I and Class-III MHC genetic subregions contribute to natural long-term non progression in HIV infection
Guergnon, J. and Dalmasso, C. and Broet, P. and Meyer, L. and Westrop, S.J. and Imami, N. and Vicenzi, E. and Morsica, G. and Tinelli, M. and Poma, B.Z. and Goujard, C. and Potard, V. and Gotch, F.M. and Casoli, C. and Cossarizza, A. and others, O.
Journal of Infectious Diseases
- Sparsity with sign-coherent groups of variables via the cooperative-Lasso
Chiquet, J. and Grandvalet, Y. and Charbonnier, C.
The Annals of Applied Statistics
http://arxiv.org/abs/1103.2697
2012
2011
Preprint
- Estimation in autoregressive model with measurement error
Dedecker, J. and Samson, A. and Taupin, M.-L.
http://hal.archives-ouvertes.fr/hal-00591114/fr/
- Estimation of a non-parametric variable importance measure of a continuous exposure
Chambaz, A. and Neuvial, P. and van der Laan, M.J.
http://hal.archives-ouvertes.fr/hal-00629899/en
- Is it possible to construct an asymptotically efficient estimator of the proportion of true null hypotheses in a multiple testing setup?
Nguyen, V.H. and Matias, C.
http://hal.archives-ouvertes.fr/hal-00647082/fr/
- On False Discovery Rate thresholding for classification under sparsity
Neuvial, P. and Roquain, E.
http://hal.archives-ouvertes.fr/hal-00604427/
Journal article
- Accounting for Population Stratification in Practice: a Comparison of the Main Strategies Dedicated to Genome-Wide Association Studies
Bouaziz, M. and Ambroise, C. and Guedj, M.
PLOS one Vol. 6 No. 12
http://www.plosone.org/article/info%3Adoi/10.1371/journal.pone.0028845
- Defining a robust biological prior from Pathway Analysis to drive Network Inference.
Jeanmougin, M. and Guedj, M. and Ambroise, C.
J-SFdS Vol. 152 No. 2
http://journal-sfds.math.cnrs.fr/index.php/J-SFdS/article/view/65
- Detection of chromosomal abnormalities using high resolution arrays in clinical cancer research
Dalmasso, C. and Broët, P.
Journal of Biomedical Informatics No. doi:10.1016/j.jbi.2011.06.003
http://www.sciencedirect.com/science/article/pii/S1532046411001031
- Genomic Profiles Specific to Patient Ethnicity in Lung Adenocarcinoma
Broet, P. and Dalmasso, C. and Tan, E.H. and Alifano, M. and Zhang, S.L. and Wu, J. and Lee, M.H. and Regnard, J.F. and Lim, W.T. and Koong, H.N. and Agasthian, T. and Miller, L. and Camilleri-Broet, S. and Tan, P.
Clinical Cancer Research Vol. 17 No. 11 pp. 3542-50
- Inferring Multiple Graphical Structures
Chiquet, J. and Grandvalet, Y. and Ambroise, C.
Statistics and Computing Vol. 21 No. 4 pp. 537-553
http://dx.doi.org/10.1007/s11222-010-9191-2
- Overlapping Stochastic Block Models with Application to the French Political Blogosphere
Latouche, P. and Birmelé, E. and Ambroise, C.
Annals of Applied Statistics Vol. 5 No. 1 pp. 309-336
http://www.imstat.org/aoas/
http://stat.genopole.cnrs.fr/_media/members/platouche/osbm_aoas.pdf
- Parameter identifiability in a class of random graph mixture models
Allman, E.S. and Matias, C. and Rhodes, J.A.
Journal of Statistical Planning and Inference Vol. 141 No. 5 pp. 1719-1736
doi:10.1016/j.jspi.2010.11.022
http://arxiv.org/abs/1006.0826
- Parent-specific copy number in paired tumor-normal studies using circular binary segmentation
Olshen, A.B. and Bengtsson, H. and Neuvial, P. and Spellman, P.T. and Olshen, R.A. and Seshan, V.E.
Bioinformatics Vol. 27 No. 15 pp. 2038-2046
http://bioinformatics.oxfordjournals.org/content/27/15/2038
Thesis
- De l'art de résumer pour tenter de comprendre en génomique évolutive
Devauchelle, C.
Habilitation à diriger des recherches, Université d'Évry val d'Essonne
- De la nécessité de maîtriser les théories de l'évolution les plus récentes pour être en mesure de proposer des modèles vraisemblables d'évolution des architectures modulaires des protéines
Brézellec, P.
Habilitation à diriger des recherches, Université de Versailles Saint Quentin
- Etude structurelle des réseaux : modèles aléatoires, motifs et cycles
Birmelé, E.
Habilitation à diriger des recherches, Université d'Évry val d'Essonne
Seminar and communication
2010
Journal article
- Automatic detection of anchor points for multiple sequence alignment
Pitschi, F. and Devauchelle, C. and Corel, E.
BMC Bioinformatics Vol. 11 pp. 445
http://dx.doi.org/10.1186/1471-2105-11-445
- Clustering based on random graph model embedding vertex features
Zanghi, H. and Volant, S. and Ambroise, C.
Pattern Recognition Letters Vol. 31 No. 9 pp. 830-836
- MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Corel, E. and Pitschi, F. and Laprevotte, I. and Grasseau, G. and Didier, G. and Devauchelle, C.
BMC Bioinformatics Vol. 11 pp. 406
doi:10.1186/1471-2105-11-406
http://www.biomedcentral.com/1471-2105/11/406
- Should We Abandon the t-Test in the Analysis of Gene Expression Microarray Data: A Comparison of Variance Modeling Strategies
Jeanmougin, M. and de Reynies, A. and Marisa, L. and Paccard, C. and Nuel, G. and Guedj, M.
PLoS ONE Vol. 5 No. 9 pp. e12336
http://dx.doi.org/10.1371%2Fjournal.pone.0012336
- Strategies for Online Inference of Network Mixture
Zanghi, H. and Picard, F. and Miele, V. and Ambroise, C.
Annals of Applied Statistics Vol. 4 No. 2 pp. 687-714
http://arxiv.org/abs/0910.2034
- Weighted-Lasso for Structured Network Inference from Time Course Data
Charbonnier, C. and Chiquet, J. and Ambroise, C.
Statistical Applications in Genetics and Molecular Biology Vol. 9 No. 1
http://www.bepress.com/sagmb/vol9/iss1/art15
In proceedings
- Enumerating chemical organisations in consistent metabolic networks: Complexity and algorithms.
Milreu, P. and Acuna, V. and Birmelé, E. and Crescenzi, P. and Marchetti-Spaccamela, A. and Sagot, M.-F. and Stougie, L. and Lacroix, V.
WABI'2010 Vol. 6293 No. 226-237
Thesis
- Approches modèles pour la structuration du Web vu comme un graphe
Zanghi, H.
Thèse de doctorat, Université d'Évry val d'Essonne
- Modèle d'évolution avec dépendance au contexte et Corrections de statistiques d'adéquation en présence de zéros aléatoires
Finkler, A.
Thèse de doctorat, Université de Strasbourg
- Modèles de graphes aléatoires à structure cachée pour l'analyse des réseaux
Latouche, P.
Thèse de doctorat, Université d'Évry val d'Essonne
Seminar and communication
- A comprehensive study of treatment response in basal breast cancer combining network inference and pathway analysis - Cambridge
Jeanmougin, M. and Guedj, M. and Ambroise, C.
Cancer Bioinformatics Workshop
2009
Journal article
- A scale-free graph model based on bipartite graphs
Birmelé, E.
Discrete Applied Mathematics Vol. 157 No. 10 pp. 2267-2284
http://dx.doi.org/10.1016/j.dam.2008.06.052
- Adaptive goodness-of-fit testing from indirect observations
Butucea, C. and Matias, C. and Pouet, C.
Annales de l'Institut Henri Poincaré (B) Probabilités et Statistiques Vol. 45 No. 2 pp. 352-372
doi:10.1214/08-AIHP166
http://hal.archives-ouvertes.fr/hal-00591200_v1/
- An association study of 22 candidate genes in psoriasis families reveals shared genetic factors with other autoimmune and skin disorders
Oudot, T. and Lesueur, F. and Guedj, M. and de Cid, R. and McGinn, S. and Heath, S. and Foglio, M. and Prum, B. and Lathrop, M. and Prud'homme, J.F. and Fischer, J.
J Invest Dermatol. Vol. 129 No. 11 pp. 2637-45
- Deciphering the connectivity structure of biological networks using MixNet
Picard, F. and Miele, V. and Daudin, J.-J. and Cottret, L. and Robin, S.
BMC Bioinformatics Vol. 10 No. Suppl 6 pp. S17
- Do genetic recombination and gene density shape the pattern of DNA elimination in rice LTR-retrotransposons?
Tian, Z. and Rizzon, C. and Du, J. and Zhu, L. and Bennetzen, J. and Gaut, B. and Jackson, S. and Ma, J.
Genome Res. Vol. 19 No. 12 pp. 2221-30
http://www.ncbi.nlm.nih.gov.gate1.inist.fr/pubmed/19789376?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1
- Estimating the joint distribution of independent categorical variables via model selection
Durot, C. and Lebarbier, E. and Tocquet, A.S.
Bernoulli Vol. 15 No. 2 pp. 475-507
- Identifiability of parameters in latent structure models with many observed variables
Allman, E.S. and Matias, C. and Rhodes, J.A.
Annals of Statistics Vol. 37 No. 6A pp. 3099-3132
doi:10.1214/09-AOS689
http://arxiv.org/abs/1006.0826
- Inferring dynamic genetic networks with low order independencies.
Lèbre, S.
Statistical Applications in Genetics and Molecular Biology Vol. 8 No. 1 pp. Article 9
http://www.bepress.com/sagmb/vol8/iss1/art9/
- Inferring sparse Gaussian graphical models with latent structure
Ambroise, C. and Chiquet, J. and Matias, C.
Electronic Journal of Statistics Vol. 3 pp. 205-238
http://projecteuclid.org/DPubS?service=UI&version=1.0&verb=Display&handle=euclid.ejs/1238078905
- kerfdr: A semi-parametric kernel-based approach to local FDR estimations.
Guedj, M. and Célisse, A. and Robin, S. and Nuel, G.
BMC Bioinformatics Vol. 10 pp. 84+
http://dx.doi.org/10.1186/1471-2105-10-84
- Mean analysis of an online algorithm for the vertex cover problem
Birmelé, E. and Delbot, F. and Laforest, C.
Information Processing Letters Vol. 109 pp. 436-439
http://dx.doi.org/10.1016/j.ipl.2008.12.021
- Number of hidden states and memory: a joint order estimation problem for Markov chains with Markov regime
Chambaz, A. and Matias, C.
ESAIM Probab. & Stat. Vol. 13 pp. 38-50
DOI: 10.1051/ps:2007048
http://stat.genopole.cnrs.fr/_media/members/cmatias/esaim06-72-revise.pdf
- SIMoNe: Statistical Inference for MOdular NEtworks
Chiquet, J. and Smith, A. and Grasseau, G. and Matias, C. and Ambroise, C.
Bioinformatics Vol. 25 No. 3 pp. 417-418
http://dx.doi.org/10.1093/bioinformatics/btn637
- Tree-width of graphs without a 3 X 3 grid minor
Birmelé, E. and Bondy, J.A. and Reed, B.
Discrete applied mathematics Vol. 157 No. 12 pp. 2577-2596
http://dx.doi.org/10.1016/j.dam.2008.08.003
In proceedings
- A latent logistic model to uncover overlapping clusters in networks
Latouche, P. and Birmelé, E. and Ambroise, C.
Sociétée française consacrée à l'intelligence artificielle (AFIA). Atelier apprentissage et graphes pour les systèmes complexes. Hammamet (Tunisia)
- Detecting Network Motifs by Local Concentration
Birmelé, E.
JOBIM 2009 pp. 91-97
- Uncovering overlapping clusters in biological networks
Latouche, P. and Birmelé, E. and Ambroise, C.
Journées ouvertes en biologie, informatique et mathématiques (Jobim). Nantes
Invited conference
- A latent logistic model to uncover overlapping clusters in networks
Latouche, P. and Birmelé, E. and Ambroise, C.
Sociétée française de classification. Grenoble
- Overlapping stochastic block models
Latouche, P. and Birmelé, E. and Ambroise, C.
European meeting of statistician. Toulouse
Article without referee
- Problématiques statistiques à l'heure de la post-génomique
Neuvial, P. and Bourguignon, P.-Y.
Variances Vol. 35 pp. 56--60
2008
Journal article
- A mixture model for random graphs
Daudin, J.-J. and Picard, F. and Robin, S.
Statist. Comput. Vol. 18 No. 2
- A note on allelic tests in case-control association studies
Guedj, M. and Nuel, G. and Prum, B.
Annals of Human Genetics Vol. 72 pp. 407--409
http://www.blackwell-synergy.com/doi/abs/10.1111/j.1469-1809.2008.00438.x
- Adaptivity in convolution models with partially known noise distribution
Butucea, C. and Matias, C. and Pouet, C.
Electronic Journal of Statistics Vol. 2 pp. 897-915
doi:10.1214/08-EJS225
http://projecteuclid.org/DPubS?service=UI&version=1.0&verb=Display&handle=euclid.ejs/1223057406
- An EM algorithm for estimation in the Mixture Transition Distribution Model
Lebre, S. and Bourguignon, P.-Y.
Journal of Statistical Computation and Simulation Vol. 78 No. 8 pp. 713--729
http://arxiv.org/abs/0803.0525
- Association between the IRF5 rs2004640 functional polymorphism and systemic sclerosis: A new perspective for pulmonary fibrosis
Dieude, P. and Guedj, M. and Wipff, J. and Avouac, J. and Fajardy, I. and Diot, E. and Granel, B. and Sibilia, J. and Cabane, J. and Mouthon, L. and Cracowski, J. and Carpentier, P. and Hachulla, O. and Kahan, A. and Boileau, C. and Allanore, Y.
Arthritis Rheumatoid Vol. 60 pp. 225--233
http://www.ncbi.nlm.nih.gov/pubmed/19116937?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum
- DNA physical properties determine nucleosome occupancy from yeast to fly
Miele, V. and Vaillant, C. and d'Aubenton-Carafa, Y. and Thermes, C. and Grange, T.
Nucleic Acids Res. Vol. 36 No. 11 pp. 3746-3756
http://nar.oxfordjournals.org/cgi/content/abstract/36/11/3746
- Drifting Markov Models with Polynomial Drift and Applications to DNA Sequences
Vergne, N.
Statistical Applications in Genetics and Molecular Biology Vol. 7 No. 1
http://www.bepress.com/sagmb/vol7/iss1/art6/
- Every longest circuit of a $3$-connected, $K_ {3,3}$-minor free graph has a chord
Birmelé, E.
Journal of Graph Theory Vol. 58 No. 4 pp. DOI: 10.1002/jgt.20312
DOI: 10.1002/jgt.20312
http://www3.interscience.wiley.com/cgi-bin/fulltext/119230743/PDFSTART
- Fast Online Graph Clustering via Erdös Renyi Mixture
Zanghi, H. and Ambroise, C. and Miele, V.
Pattern Recognition Vol. 41 No. 12 pp. 3592--3599
- Identification of functional modules based on transcriptional regulation structure
Birmelé, E. and Elati, M. and Rouveirol, C. and Ambroise, C.
BMC Proceedings Vol. 2 No. (Suppl 4):S4
- Poisson approximation for search of rare words in DNA sequences
Vergne, N. and Abadi, M.
ALEA Vol. 4 pp. 223--244
http://alea.impa.br/articles/v4/04-11.pdf
- Sharp errors for point-wise Poisson approximations in mixing processes
Abadi, M. and Vergne, N.
Nonlinearity Vol. 21 pp. 2871--2885
http://stacks.iop.org/0951-7715/21/2871
- The PTPN22 620W allele confers susceptibility to Systemic Sclerosis: a large case control study among European Caucasians and meta-analysis
Dieude, P. and Guedj, M. and Wipff, J. and Avouac, J. and Hachulla, E. and Diot, E. and Granel, B. and Sibilia, J. and Cabane, J. and Meyer, O. and Mouthon, L. and Kahan, A. and Boileau, C. and Allanore, Y.
Rheumatism and Arthritis Vol. 58 pp. 2183--2188
- Universal false discovery rate estimation methodology for genome-wide association studies
Forner, K. and Lamarine, M. and Guedj, M. and Dauvillier, J. and Wojcik, J.
Human Heredity Vol. 65 pp. 183-194
http://content.karger.com/produktedb/produkte.asp?typ=fulltext&file=000112365
- Variants of the MATP/SLC45A2 gene are protective for melanoma in the French population
Guedj, M. and Bourillon, A. and Combadières, C. and Rodero, M. and Dieude, P. and Descamps, V. and Dupin, N. and Wolkenstein, P. and Aegerter, P. and Lebbe, C. and Basset-Seguin, N. and Prum, B. and Saiag, P. and Grandchamp, B. and Soufir, N.
Human Mutation Vol. 29 pp. 1154--1160
http://www.ncbi.nlm.nih.gov/pubmed/18683857?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum
In proceedings
- Libfbat: a C++ library for family based association testing
Nuel, G. and Slaoui, Y. and Miele, V.
JOBIM 2008
- Taking into account missing genotypes and errors in Family Based Association Testing using an Expectation-Maximization framework
Nuel, G. and Miele, V. and Slaoui, Y. and Rebai, A.
International Symposium on Biotechnology pp. 508-514
Invited conference
- Analyse de structures dans les réseaux
Latouche, P. and Birmelé, E.
journées MAS (modélisation aléatoire et statistique). Rennes
Thesis
- Chaînes de Markov régulées et approximation de Poisson pour l'analyse de séquences biologiques
Vergne, N.
Thèse de doctorat, Université d'Évry val d'Essonne
- Parcimonie dans les modèles markoviens et applications à l'analyse des séquences biologiques
Bourguignon, P.-Y.
Thèse de doctorat, Université d'Évry val d'Essonne
- Statistique asymptotique dans des modèles à variables latentes
Matias, C.
Habilitation à diriger des recherches, Université d'Évry val d'Essonne
Seminar and communication
- Chaînes de Markov régulées pour l'analyse de séquences biologiques.
Vergne, N.
Séminaire de l'Unité MIA-Jouy, Jouy-en-Josas
http://www.jouy.inra.fr/mia/pratique/seminaire
- Chaînes de Markov régulées pour l'analyse de séquences biologiques.
Vergne, N.
Séminaire Marin Mersenne - Samos, Mathématiques des Systèmes Complexes, Université Paris 1.
http://samos.univ-paris1.fr/-Mathematiques-des-systemes-
- Evidence for a strong association between polymorphims of the SLC45A2/MATP gene and melanoma in the french population
Guedj, M. and Soufir, N.
5e Journées Mélanome Ile-de-Francer
- kerfdr: A semi-parametric kernel-based approach to local FDR estimation.
Guedj, M. and Célisse, A. and Robin, S. and Nuel, G.
Statistical Methods for Post-Genomics Data 2008, Rennes
- Poisson approximation for search of rare words in DNA sequences.
Vergne, N.
Workshop on "Hitting, returning and matching in dynamical systems, information theory and mathematical biology", Eurandom, Eindhoven.
http://www.eurandom.tue.nl/workshops/2008/hitting-returning/hitting_returning.htm
2007
Journal article
- A multiple-marker two-step approach for genome-wide association studies
Aschard, H. and Guedj, M. and Demenais, F.
BMC Proceedings Vol. 1 No. S134
http://www.biomedcentral.com/1753-6561/1/S1/S134
- An online Classification EM algorithm based on the mixture model
Same, A. and Ambroise, C. and Govaert, G.
Statistics and Computing Vol. 17 No. 3 pp. 209-218
http://stat.genopole.cnrs.fr/sg/Members/cambroise/papers/article_journal_sequentiel.pdf
- Comparing sequences without alignments: application to HIV/SIV subtyping
Didier, G. and Debomy, L. and Pupin, M. and Zhang, M. and Grossmann, A. and Devauchelle, C. and Laprevotte, I.
BMC Bioinformatics Vol. 8 pp. 1
- Computing power in case-control association studies through the use of quadratic approximations: application to meta-statistics
Guedj, M. and Della-Chiesa, E. and Picard, F. and Nuel, G.
Annals of Human Genetics Vol. 71 pp. 262-270
http://www.blackwell-synergy.com/doi/abs/10.1111/j.1469-1809.2006.00316.x
- Cumulative Distribution Function of a Geometric Poisson Distribution
Nuel, G.
J. Stat. Comp. Sim. Vol. 78 No. 3 pp. 385 &ndash 394
http://stat.genopole.cnrs.fr/~gnuel/pdf/preprint_geopoi_2006.pdf
- Genomics of glycopeptidolipid biosynthesis in Mycobacterium abscessus and M. chelonae
Ripoll, F. and Deshayes, C. and Pasek, S. and and Risler, J.L. and and Reyrat, J.M.
BMC Genomics Vol. 8 pp. 114-
- IRF5 rs2004640-T allele, the new genetic factor for systemic lupus erythematosus, is not associated with rheumatoid arthritis
Garnier, S. and Dieudé, P. and Michou, L. and al and Bardin, T. and Prum, B. and Cornélis, F.
Ann. Rheum. Dis. Vol. 66 pp. 828-831
- Linkage proof for PTPN22, the new rheumatoid arthritis susceptibility gene, a human autoimmunity gene
Michou, L. and Lasbleiz, S. and al and Prum, B. and Bardin, T. and Dieude, P. and Cornélis, F.
Proc. Natl. Acad. Sci. USA Vol. 104 pp. 1649-1654
- Parsimonious additive models
Avalos, M. and Grandvalet, Y. and Ambroise, C.
CSDA Vol. 51 No. 6 pp. 2851-2870
http://stat.genopole.cnrs.fr/sg/Members/cambroise/papers/AvalosCSDA2007.pdf
- The Erdos-Posa property for long circuits
Birmelé, E. and Bondy, J.A. and Reed, B.
Combinatorica Vol. 27 No. 2 pp. 135-145
http://www.springerlink.com/content/h6730j3868272l88/?p=ddf1879b0b0246e4a9f977226fe9ab48&pi=0
- The ITGAV rs3738919-C allele is associated with and linked to rheumatoid arthritis in the European Caucasian population: a family-based study
Jacq, L. and Garnier, S. and Dieudé, P. and Michou, L. and al and Prum, B. and Bardin, T. and Cornélis, F.
Arthritis Research & Therapy Vol. 9 No. R63
In proceedings
- Assessing the exceptionality of network motifs
Picard, F. and Daudin, J.-J. and Koskas, M. and Schbath, S. and Robin, S.
Jobim 2007
- Brambles, prisms and grids
Birmelé, E. and Bondy, J.A. and Reed, B.
Graph Theory in Paris - Proceedings of a Conference in Memory of Claude Berge
http://stat.genopole.cnrs.fr/sg/Members/ebirmele/page-web/publications-1/BBRPrism.pdf
- Catching Local Replications: Use of the Local Score in Replicated Association Studies
Guedj, M. and Wojcik, J. and Nuel, G.
Proceedings of EMGM 2007 in Annals of Human Genetics Vol. 71 pp. 550&ndash559
http://www.blackwell-synergy.com/doi/abs/10.1111/j.1469-1809.2007.00365.x
- Joint segmentation of multivariate Gaussian processes using mixed linear models
Lebarbier, E. and Picard, F. and Bundiska, E. and Robin, S.
ASMDA 2007
- Local Similarities and Clustering of Biological Sequences
Corel, E. and El Feghali, R. and Gérardin, F. and Hoebeke, M. and Nadal, M. and Louis, A. and Laprevotte, I. and Grossmann, A. and Devauchelle, C.
Actes de JOBIM 2007 pp. 69-71
- Local Similarities and Clustering of Biological Sequences : New Insights from N-local Decoding
Corel, E. and El Feghali, R. and Gérardin, F. and Hoebeke, M. and Nadal, M. and Grossmann, A. and Devauchelle, C.
The First International Symposium on Optimization and Systems Biology (OSB 2007) Vol. Lecture Notes in Operations Research No. 7 pp. 189-195
http://www.aporc.org/LNOR/7/OSB2007F22.pdf
Thesis
- Analyse de processus stochastiques pour la génomique : étude du modèle MTD et inférence de réseaux bayésiens dynamiques.
Lèbre, S.
Thèse de doctorat, Université d'Évry val d'Essonne
- Méthodes statistiques pour l'analyse des données génétiques d'association à grande échelle
Guedj, M.
Thèse de doctorat, Université d'Évry val d'Essonne
- Outils et méthodes pour la classification pyramidale des données biologiques
Vescovo, L.
Thèse de doctorat, Université d'Évry val d'Essonne
Seminar and communication
- A multiple-marker two-step approach to genome-wide association studies
Aschard, H. and Guedj, M. and Demenais, F.
Oral presentation at the EMGM 2007, Heidelberg (Germany)
- Algorithmes EM online pour la déctection de communautés dans un graphe
Ambroise, C. and Zanghi, H.
SSB workgroup
- AModèle de mélange et algorithme EM online pour la détection de modules dans un graphe
Ambroise, C.
Séminaire ECAIS, Paris V
- Exact p-value computation and exact False Discovery Rate estimation for genome-wide association studies
Wojcik, J. and Guedj, M. and Forner, K.
Poster at the HUGO HGM2007, Montreal (Canada)
http://hgm2007.hugo-international.org/Abstracts/Publish/WorkshopPosters/WorkshopPosters05/hgm152.html
- Fast Online Graph Clustering via Erdös-Rényi Mixture
Zanghi, H. and Ambroise, C.
ASMDA, Chania, Crete, Greece
- kerfdr: a semi-parametric kernel-based estimation of the local FDR
Guedj, M. and Celisse, A. and Robin, S. and Nuel, G.
Poster ar IGES 2007, York (UK)
- Local FDR and Local Score to handle multiple-testing in large-scale genomic studies.
Guedj, M. and Wojcik, J. and Robin, S. and Nuel, G.
Seminar of the DKFZ, Heidelberg (Germany)
- Local Replication: a local-score based approach to replicated association studies
Guedj, M.
Oral Presentation at the IGES 2007, York (UK)
- Main Algorithms with Applications in Bioinformatics
Nuel, G.
Bioinformatics and Comparative Genome Analysis, Pasteur Institute of Tunis, Tunisia
- Modèles additifs parcimonieux
Ambroise, C.
Séminaire de probabilités et mathématiques finançières
- Multi-locus approaches for association studies
Guedj, M.
Seminar Epigenic INSERM, Villejuif (France)
- Statistical methods in genome-wide association studies
Nuel, G. and Guedj, M.
Colloque Génétique, Bioinformatique et Puces, Ermenonville (France)
- Statistical models for inference and interpretation of biological networks
Ambroise, C. and Picard, F. and Lèbre, S.
Conférence Evry
Book
- Analyse Statistique des Séquences Biologiques
Nuel, G. and Prum, B.
Hermes Sciences
2006
Journal article
- A fast, unbiased and exact allelic test for case-control association studies
Guedj, M. and Wojcik, J. and Della-Chiesa, E. and Nuel, G. and Forner, K.
Human Heredity Vol. 61 pp. 210-221
http://content.karger.com/ProdukteDB/produkte.asp?doi=94776
- A Reversible Jump Markov Chain Monte-Carlo Algorithm for Bacterial Promoter Motifs Discovery
Nicolas, P. and Tocquet, A.S. and Miele, V. and Muri, F.
Journal of Computational Biology Vol. 13 No. 3 pp. 651-667
- Arc-chromatic number of digraphs in which every vertex has bounded outdegree or bounded indegree
Bessy, S. and Birmelé, E. and Havet, F.
Journal of Graph Theory Vol. 53 No. 4 pp. 315-332
http://www3.interscience.wiley.com/cgi-bin/fulltext/112650730/PDFSTART
- Confirmation of the Shared Epitope Allele Classification
Michou, L. and Croiseau, P. and al and Prum, B. and Clerget, F. and Cornélis, F.
Arthritis Research and Therapy Vol. 28 pp. 79-
- Detecting Local High-Scoring segments: a first-stage approach for genome-wide association studies
Guedj, M. and Robelin, D. and Hoebeke, M. and Lamarine, M. and Wojcik, J. and Nuel, G.
Stat App Genet Mol Bio Vol. 5 pp. 1-16
http://www.bepress.com/sagmb/vol5/iss1/art22/
- DomainSieve: a protein domain-based screen that led to the identification of dam-associated genes with potential link to DNA maintenance
Brézellec, P. and Hoebeke, M. and Hiet, M.-S. and Pasek, S. and Ferat, J.-L.
Bioinformatics Vol. 22 No. 16 pp. 1935 - 1941
- Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics
Nuel, G.
Algo. Mol. Biol. Vol. 1 No. 1 pp. 5
http://www.almob.org/content/1/1/5
- Exact adaptive estimation of the shape of a periodic function with unknown period corrupted by white noise
Castillo, I. and Lévy-Leduc, C. and Matias, C.
Math. Methods Statist. Vol. 15 No. 2 pp. 146-175
- Free Full Text Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination “hot spots”.
Drouaud, J. and Camilleri, C. and Bourguignon, P.Y. and al and Prum, B. and Quesneville, H. and Mezard, C.
Genome Research Vol. 16 pp. 106-114
- Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins
Pasek, S. and Risler, J.L. and Brézellec, P.
Bioinformatics Vol. 22 No. 1418-1423
- Local decoding of sequences and alignment-free comparison
Didier, G. and Laprevotte, I. and Pupin, M. and Hénaut, A.
Journal of Computational Biology Vol. 13 No. 8 pp. 1465-1476
- Networks motifs: mean and variance for the count
Matias, C. and Schbath, S. and Birmelé, E. and Daudin, J.-J. and Robin, S.
REVSTAT Vol. 4 No. 1 pp. 31-51
http://www.ine.pt/revstat/pdf/rs060102.pdf
- Numerical solutions for Patterns Statistics on Markov chains
Nuel, G.
Stat. App. Genet. Mol. Biol. Vol. 5 No. 1 pp. 26
http://www.bepress.com/sagmb/vol5/iss1/art26/
- Parameter estimation in pair hidden Markov models
Arribas-Gil, A. and Gassiat, E. and Matias, C.
Scandinavian Journal of Statistics Vol. 33 No. 4 pp. 651-671
http://www.blackwell-synergy.com/doi/abs/10.1111/j.1467-9469.2006.00513.x
- Pattern statistics on Markov chains and sensitivity to parameter estimation
Nuel, G.
Algo. Mol. Biol. Vol. 1 No. 1 pp. 17
http://www.almob.org/content/1/1/17
- Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice.
Rizzon, C. and Ponger, L. and Gaut, B.S.
PLoS Comput Biol. Vol. 2 No. 9 pp. e115
- The role of domain redundancy in genetic robustness against null mutations
Pasek, S. and Risler, J.L. and Brézellec, P.
J. Mol. Biol. Vol. 362 pp. 184-191
In proceedings
- Assessing the exceptionality of network motifs
Picard, F. and Daudin, J.-J. and Schbath, S. and Robin, S.
Réseaux d'interactions : analyse, modélisation et simulation (RIAMS)
- DNA sequence drives nucleosome occupancy of yeast promoters
Miele, V. and Vaillant, C. and D'Aubenton, Y. and Robelin, D. and Prum, B. and Thermes, C.
Proceeding of JOBIM
- Uncovering structure in biological networks
Daudin, J.-J. and Lacroix, V. and Picard, F. and Robin, S. and Sagot, M.-F.
JOBIM 2006
- Uncovering structure in biological networks
Mariadassou, M. and Daudin, J.J. and Lacroix, V. and Miele, V. and Picard, F. and Robin, S. and Sagot, M.F.
Proceedings of RIAMS
- Which alternatives to the biased allelic test in case-control association studies
Guedj, M. and Della-Chiesa, E. and Forner, K. and Wojcik, J. and Nuel, G.
Proceedings of IGES 2006 in Genetic Epidemiology Vol. 31 pp. 450-513
http://www3.interscience.wiley.com/cgi-bin/abstract/114279001/ABSTRACT
Invited conference
- DNA physical properties predict nucleosome occupancy along genome sequences
Miele, V. and Vaillant, C. and D'Aubenton, Y. and Grange, T. and Thermes, C.
CRG Scientific Sessions
Thesis
- Le domaine protéique, une unité d'homologie pertinente en génomique comparative
Pasek, S.
Thèse de doctorat, Université d'Évry val d'Essonne
- Le transcriptome : un nouveau domaine d'application pour les statistiques, de nouveaux horizons pour la biologie
Carpentier, A.-S.
Thèse de doctorat, Université d'Évry val d'Essonne
- PMC pour l'étude des occurrences de motifs dans les séquences markoviennes
Nuel, G.
Habilitation à diriger des recherches, Université d'Evry Val d'Essonne
Seminar and communication
- A three-step approach to genome-wide association studies.
Guedj, M. and Aschard, H. and Demenais, F.
GAW15 novel methods session, Tampa (USA)
- A three-step approach to genome-wide association studies.
Aschard, H. and Guedj, M. and Demenais, F.
Poster at GAW15, Tampa (USA)
- Deterministic Finite State Automaton and Pattern statistics on Markov Chain
Nuel, G.
International Workshop on Applied Probability (IWAP), University of Connexticut, USA
- Du supervisé au non supervisé en passant par les modèles additifs parcimonieux
Ambroise, C.
SSB workgroup
- Effective p-values computations using FMCI: application to local score and pattern statistics
Nuel, G.
International Workshop on Applied Probability (IWAP), University of Connexticut, USA
- Exact Distribution of Local Score using Finite Markov Chain Imbedding: an Effective Approach
Nuel, G.
International Congress on the Application of Mathematics (ICAM), Santiago, Chili
- Les chaînes de Markov régulées : dérive polynomiale
Vergne, N.
Séminaire SCMBB, Bruxelles
- Les modèles de Markov régulés pour l'étude des séquences biologiques: dérive polynomiale et applications
Vergne, N.
Colloque "Jeunes probabilistes et statisticiens", Aussois
- Les modèles de Markov régulés pour l'étude des séquences biologiques: dérive polynomiale et applications
Vergne, N.
6ème Journées Jeunes Chercheurs en Biométrie, Villejuif
- Local Score in genome-wide association studies
Guedj, M.
Seminar at INSERM U794, Evry (France)
- Local Score in genome-wide association studies
Guedj, M.
Seminar at INSERM U535, Villejuif (France)
- Local Score statistic: picking-up candidates genomic regions in genome-wide association studies
Guedj, M. and Aschard, H. and Wojcik, J. and Nuel, G. and Demenais, F.
Poster at the GAW15, Tampa (USA)
- Methods for genome-wide association studies
Guedj, M.
Seminar on AIDS genetic data analysis organised by the CNAM, Paris (France)
- Methods for genome-wide association studies
Guedj, M.
Seminar SSB
- Modèles statistiques pour l'inférence et interprétation de réseaux biologiques
Ambroise, C. and Picard, F. and Lèbre, S.
Genopole
- Should we combine association statistics in case-control association studies
Della-Chiesa, E. and Guedj, M. and Nuel, G.
Poster at EMGM 2006, Cardiff (UK)
- Which alternatives to the biased allelic test in case-control association studies
Guedj, M. and Della-Chiesa, E. and Forner, K. and Wojcik, J. and Nuel, G.
Poster at EMGM 2006, Cardiff (UK)
Article without referee
- Búsqueda automática de los genes
Prum, B.
- Las matemáticas en la búsqueda de un gen responsable de cáncer
Prum, B.
- Statistique en Génomique
Prum, B.
Book in a collection of books
- The use of Markov Models and Hidden Markov Models in genomics
Prum, B. and Tocquet, A.S.
Mathematical and computational methods in biology
Herman
2005
Journal article
- A statistical approach for array CGH data analysis
Picard, F. and Robin, S. and Lavielle, M. and Vaisse, C. and Daudin, J.-J.
BMC Bioinformatics Vol. 6 No. 1 pp. 1--14
- Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae
Bekaert, M. and Richard, H. and Prum, B. and Rousset, J.P.
Genome Research Vol. 10 pp. 1411-1420
- Integer linear programming as a tool for constructing trees from quartet data
Weyer-Menkoff, J. and Devauchelle, C. and Grossmann, A. and Grunewald, S.
Comput Biol Chem Vol. 29 No. 3 pp. {196-203
- Minimax estimation of the noise level and of the deconvolution density in a semiparametric convolution model
Butucea, C. and Matias, C.
Bernoulli Vol. 11 No. 2 pp. 309-340
http://projecteuclid.org/DPubS?service=UI&version=1.0&verb=Display&handle=euclid.bj/1116340297
- New classification of HLA-DRB1 alleles support the shared epitope hypothesis of rheumatoid arthritis susceptibility
Tezenas du Montcel, S. and Michou, L. and al and Prum, B. and Cornelis, F. and Clerget, F.
Arthritis Rheumatism Vol. 52 No. 1063-1068
- Rheumatoid arthritis seropositive for the rheumatoid factor is linked to the protein tyrosine phosphatase nonreceptor 22-620W allele
Dieude, P. and Garnier, S. and Michou, L. and al and Prum, B. and Cornelis, F.
Arthritis Research & Therapy Vol. 7
- S-SPatt: Simple Statistics for Patterns on Markov chains
Nuel, G.
Bioinformatics Vol. 21 No. 13 pp. 3051-3052
application note
http://bioinformatics.oxfordjournals.org/cgi/content/full/21/13/3051
- seq++: a package for biological sequences analysis with a range of Markov-related models
Miele, V. and Bourguignon, P.Y. and Robelin, D. and Nuel, G. and Richard, H.
BioInformatics Vol. 21 No. 11 pp. 2783-2784
Invited conference
- Searching for the positions of nucleosome using Hidden Markov Models
Prum, B. and Miele, V. and Vaillant, C.
Geometry Of Genome, Leicester
Thesis
- Détection de courts segments inversés dans les génomes - méthodes et applications
Robelin, D.
Thèse de doctorat, Université d'Évry val d'Essonne
http://tel.archives-ouvertes.fr/tel-00010628/fr/
- Prédiction de la localisation cellulaire des protéines à l'aide de leurs séquences biologiques.
Richard, H.
Thèse de doctorat, Université d'Évry val d'Essonne
Seminar and communication
- Applying detection of significant periods to transcription factor organisation in S cerevisiae
Hoebeke, M. and Richard, H. and Vaillant, C. and Miele, V. and Baudry, M. and Prum, B.
ECCB Poster
- Drifting Markov Models
Vergne, N.
ECCB poster, Madrid
- Introduction à l'analyse à grande échelle des données de SNPs
Guedj, M.
Seminar Bioinfo-Ouest, Rennes (France)
- Les chaînes de Markov régulées
Vergne, N.
JOBIM poster, Lyon
- Local Score in genome-wide association studies
Guedj, M.
Seminar at University of Medecine, Lyon (France)
- Local Score statistics: application to large scale association studies
Guedj, M. and Nuel, G.
Poster at IPG, Lyon (France)
Article without referee
- Trouver les gènes coupables
Prum, B.
2004
Journal article
- A TNFR1 genotype with a protective role in familial rheumatoid arthritis.
Dieudé, P. and Osorio, J. and al and Prum, B. and Cornelis, F.
Arthritis Rheumatism Vol. 50 pp. 413-419
- Dense genome-wide linkage analysis of rheumatoid arthritis including covariates
Osorio , J. and Bukulmez, H. and Petit-Teixeira, E. and Michou, L. and al and Prum, B. and Olson, J. and Cornélis, F.
Arthritis Rheumatism Vol. 50 pp. 2557-2565
- LD-SPatt: Large Deviations Statistics for Patterns on Markov chains
Nuel, G.
Journal of Comp. Biol. Vol. 11 No. 6 pp. 1023-1033
http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2004.11.1023
In proceedings
- seq++: a C++ library for sequence storage, Markov modelization abd scoring analysis
Miele, V. and Robelin, D. and Bourguignon, P.Y. and Nuel, G. and Richard, H.
Proceedings of International Congress on BioInformatics
Invited conference
- Analisis of biological sequences by Markov models
Prum, B.
International Conference on Analysis of Genomic Data, Harvard Medical School (Boston MA),
Seminar and communication
- Déséquilibre de liaison et association à la maladie dans les études de SNPs cas-témoins à échelle
Guedj, M. and Nuel, G.
Les industriels et les mathématiciens se parlent, IHP, Paris
- Emploi de chaînes de Markov régulées pourl'analyse de séquences biologiques
Vergne, N.
Séminaire SSB, Jouy-en-Josas
- Mathématiques et Génomes
Nuel, G.
Université d'été: exemples d'intervention des mathématiques dans la démarche scientifique, Université Bordeaux 1.
Article without referee
- La recherche de gènes impliqués dans une maladie, collaboration avec Genset-Serono
Prum, B. and Bourguignon, P.Y. and Guedj, M. and Képès, F. and Matias, C. and Nuel, G. and Omont, N.
Matapli 74 p23-41
2003
Journal article
- AMIGene: Annotation of Microbial Genes
Bocs, S. and Cruveiller, S. and Vellenet, D. and Nuel, G. and Medigue, C.
Nucleic Acid Res. Vol. 31 No. 13 pp. 3723-3726
http://nar.oxfordjournals.org/cgi/content/abstract/31/13/3723
- Estimation of the inbreeding coefficient through use of genomic data
Leuteneger, A.L. and Prum, B. and Genin, E. and Verny, C. and Lemainque, A. and Clerget, F. and Thompson, E.
Am. J. Hum. Genet. Vol. 73 pp. 516-523
- On the distance between the empirical process and its concave majorant in a monotone regression framework
Durot, C. and Tocquet, A.S.
Ann. I. H. Poincar\'e, Probabilit\'es \& Statistique Vol. 39 pp. 217-240
- Short inverse complementary amino-acid sequences generate protein complexity
Goldstein, D.J. and Fondrat, C. and Muri, F. and Nuel, G. and Saragueta, P. and Tocquet, A.S. and Prum, B.
C. R. Acad. Sci. Biologie Vol. 326 pp. 339-348
- SPA: Simple web tool to assess statistical significance of DNA patterns
Richard, H. and Nuel, G.
Nucleic Acid Res. (2003). 31 (13): 3679-81. Vol. 31 No. 13 pp. 3679-3681
application note
http://nar.oxfordjournals.org/cgi/content/abstract/31/13/3679
Invited conference
- Statistical analisis of genomes
Prum, B.
Royal Statistical Society Conference, Diepenbeek (Pays Bas),
- Statistique et génome
Prum, B.
Conférence plénière à la conférence européenne "Applied Mathematics and Applications of Mathematics" (AMAM), Nice-Antipolis
Thesis
- Mise au point et utilisation de modèles de chaînes de Markov cachées pour l'étude des séquences d'ADN
Nicolas, P.
Thèse de doctorat, Université d'Evry Val d'Essonne
2002
Journal article
- Association Between Tumor Necrosis Factor Receptor II and Familial, but Not Sporadic, Rheumatoid Arthritis
Dieudé, P. and Petit, E. and al and Prum, B. and Cornélis, F.
Arthritis Rheumatism Vol. 46 pp. 2039-2044
- Mining Bacillus Subtilis chromosome heterogeneities using hidden Markov models
Nicolas, P. and Bize, L. and Muri, F. and Hoebeke, M. and Rodolphe, F. and Ehrlich, S.D. and Prum, B. and Bessières, P.
Nucleic Acids Research Vol. 30 pp. 1418-1426
Invited conference
- Cycle de 7 conférences sur l'analyse statistique des génomes
Prum, B.
6th Brazilian School of Probability, Praia de Toninhas, Brésil
- Statistical analisis of biological sequences
Prum, B.
15th National Symposium of Probability and Statistics (SINAPE), Aguas de Lindoia, Brésil,
Seminar and communication
- Influence de l'évolution dans l'étude des motifs de fréquences exceptionnelles dans les séquences d'ADN.
Huvet, M. and Nuel, G.
JOBIM poster, St-Malo, France.
- Sélection de modèles de Markov cachés et hétérogénéité des séquences 3'UTR du génome humain
Miele, V. and Nicolas, N. and Muri, F. and Tocquet, A.S.
JOBIM poster
Article without referee
- Trouver un gène responsable du cancer
Prum, B.
2001
Journal article
- Goodness of fit test for isotonic regression
Durot, C. and Tocquet, A.S.
ESAIM, Probabilit\'es \& Statistique Vol. 5 pp. 119-140
- Likelihood based inference in nonlinear regression models using the p* and R* approach
Tocquet, A.S.
Scandinavian Journal of Statistics Vol. 28 pp. 429-443
- Predicting distances using a linear model: the case of varietal distinctness
Nuel, G. and Robin, S. and Baril, C.
Journal of Applied Statistics Vol. 28 No. 5 pp. 607-627
- Une approche statistique de l'analyse des génomes
Muri, F. and Prum, B.
La Gazette des Mathématiciens Vol. 89 pp. 63-98
In proceedings
- Varietal distinctness assisted by molecular markers: a methodological approach
Nuel, G. and Baril, C. and Robin, S.
Acta Horiculturae, Proceedings of the MMH congress No. 546 pp. 65-71
Invited conference
- The use of MM and HMM in the annotation og genomes (2 conferences)
Prum, B.
Workshop on Statistical & Computational Genomics, Indian Statistical Institute, Calcutta, Indes
Thesis
- Grandes déviations et chaînes de Markov pour l'étude des occurrences de mots dans les séquences biologiques
Nuel, G.
Thèse de doctorat, Université d'Evry Val d'Essonne
Seminar and communication
- Grandes déviations et chaînes de Markov: occurrences de mots ou de motifs
Nuel, G.
33ème journées de la Société Française de Statistiques, Nantes, France
- Large Deviations and Markov chains for the study of word counts in biologiqcal sequences
Nuel, G.
European Young Statistician Meeting, Liptovsky Mykulas, Slovaquie
- Unusual word frequencies in Markov chains: the large deviation approach
Nuel, G.
Semstat congress about extremes, Goteborg, Suède
Article without referee
- La recherche automatique de gènes
Prum, B.
- Mathématiques et biologie
Prum, B.
2000
Journal article
- Inverse Complementary homologues of cysteine signatures
Goldstein, D.J. and Muri, F. and Saragueta, P. and Prum, B.
CRAS Sciences de la Vie Vol. 323 No. 2 pp. 167-172
Invited conference
- L'interface entre les mathématiques et la génétique
Prum, B.
Société Luxembourgeoise de Mathématiques
- Mathématiques et génome
Prum, B.
Ecole Polytechnique
Seminar and communication
- Grandes Déviations et chaînes de Markov pour l'étude des occurrences de mots ou de familles de mots
Nuel, G.
Colloque TAS (Traitement et Analyse des Séquences), Evry, France.
- Une nouvelle frontière pour les mathématiques : la génomique
Prum, B.
GERMEA &ndash Pau
- Varietal distinctness assisted by molecular markers: a methodological approach
Nuel, G. and Robin, S. and Baril, C.
Molecular Markers in Horticulturae, Montpellier, France
MMH (Molecular Markers in Horticulturae) Congress, Montpellier, France
Article without referee
- Les chaînes de Markov dans l'analyse des génomes
Prum, B.
- Une approche statistique de l'analyse des séquences génétiques
Prum, B.
1999
In proceedings
- Searching gene transfers on Bacillus Subtilis using hidden Markov models
Bize, L. and Muri, F. and Samson, F. and Rodolphe, F. and Ehrlich, S.D. and Prum, B. and Bessières, P.
Recomb'99 Proceedings of the Third Annual International Conference on Computational Molecular Biology
1998
Seminar and communication
- Prédiction de distance phénotypiques à partir de données moléculaires pour la distinction variétale
Nuel, G. and Robin, S. and Baril, C.
Journées méthodologiques du GEVES (Groupe d'Etude et de Contrôle des Variétés et des Semences), Paris, France
1997
Thesis
- Comparaison d'algorithmes d'identification de chaînes de Markov cachées et application à la détection de régions homogènes dans les séquences d'ADN
Muri, F.
Thèse de doctorat, Université Paris V
Disclaimer: The listing of papers on this webpage is for my own use. Some of these files are probably covered by publisher copyrights. Please ensure that your institution has the appropriate subscription before reading any of these .pdfs.
Falconnet, M. and Behrens, S. (2012). Accurate estimations of evolutionary times in the context of strong CpG hypermutability. Journal of Computational Biology, 19(5), 519-531. Preprint Falconnet, M. (2010). Priors for the Bayesian star paradox. Mathematical Biosciences, 228(1), 90-99. arXiv 0911.0733 Falconnet, M. (2010). Phylogenetic distances for neighbour dependent substitution processes. Mathematical Biosciences, 224(2), 101-108. arXiv 0812.1962
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